Comma-delimited text file containing transcript abundance over the course of spherulation and hyphal growth from the same samples used for Ryp1 ChIP-Seq, related to S4 Fig.

Each row corresponds to a transcript. The columns are as follows: UNIQID: systemic gene name from Silveira genome [49]. Systematic gene names with _1, _2 appended have multiple isoforms as detected by kallisto although not all isoforms passed read count filter. NAME: short gene name from Mandel and colleagues [12]. Cp_anno: GenBank Coccidioides posadasii Silveira annotation. CiRS: systematic CiRS gene name for the InParanoid-mapped Coccidioides immitis RS ortholog. CiRS_anno: Genbank annotation for CiRS ortholog. HcG217B: systematic HcG217B GSC gene name for the InParanoid-mapped Histoplasma G217B ortholog. HcG217B_anno: GSC annotation for HcG217B ortholog. The next 17 columns give limma-adjusted p-values for differential expression for the listed contrasts. The next 36 columns are kallisto mean row normalized counts for each sample (three replicates per timepoint of spherulation or hyphal growth for the wildtype and ryp1∆ mutant each). The last 17 columns give limma-generated log2 fold change values for the listed contrasts. For sample and comparison labels: “Arth” refers to arthroconidia, “WT” refers to the Silveira wildtype, Ryp1 refers to the ryp1∆ mutant, “spher”/”hyph” indicates spherule and hyphal morphology. (CSV)