Additional file 6 of A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle

Additional file 6: Table S6. Common KEGG metabolic pathways in the microbiome of cattle feces. A: List of KEGG pathways along with the 175 pathways (marked with an asterisk) we chose to examine as relevant (see Methods) for our analyses. B: Most common pathways based on contigs present in at least 80% of individually collected fecal samples (N = 210) and the most abundant 1000. From left to right: the metabolic pathway KEGG id, the number of predicted KOs identified in that pathway, the pathway name, additional notes inferring the function of their study based on our analysis, and the MAGs carrying most enzymes in the common contigs. C: KEGG modules complete in at least one MAG. For this analysis, the 450 predicted modules (KAAs) were examined against the dereplicated set of our core MAGs and we present the modules that were complete (all their enzymes present) in at least one MAG. From left to right: the module description (including the KEGG pathway/s it is linked to), and the KEGG subcategory and category it belongs to.