Microplitis demolitor Official Gene Set micdem_OGSv1.0

Microplitis demolitor (Hymenoptera: Braconidae) is a parasitoid used as a biological control agent to control larval-stage Lepidoptera and serves as a model for studying the function and evolution of symbiotic viruses in the genus Bracovirus.

This dataset presents the Microplitis demolitor Official Gene Set (OGS) v1.0. The OGS is an integration of automatic gene predictions from Microplitis demolitor genome annotations NCBI-RefSeq's gene set NCBI Microplitis demolitor Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Microplitis_demolitor/101/), with manual annotations by the research community, performed via the Apollo manual curation software (https://zenodo.org/record/1295754#.YDgLyJNKivg). Manual annotations were QC'd via the GFF3toolkit (https://github.com/NAL-i5K/gff3toolkit) and NCBI's table2asn_GFF software (https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/), and merged with NCBI Microplitis demolitor Annotation Release 101 via the GFF3toolkit (https://github.com/NAL-i5K/gff3toolkit).

Resources in this dataset:
Resource Title: Microplitis demolitor Official Gene Set micdem_OGSv1.0.
File Name: micdem_OGSv1.0.tar.gz
Resource Description: This directory contains files for the Official Gene Set 1.0 for Microplitis demolitor (micdem_OGSv1.0). The general procedure for generating this OGS is outlined here: https://github.com/NAL-i5K/GFF3toolkit/. QC of community-curated models from the Apollo software was performed by NAL staff using the GFF3toolkit function gff3_QC, and errors were fixed using gff3_fix. OGSv1.0 was generated by merging NCBI-RefSeq's gene set NCBI Microplitis demolitor Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Microplitis_demolitor/101/) with the QC'd and error-corrected community-curated models, and generating i5k Workspace IDs for all manually annotated features.

1) Fasta files
- Protein Sequences: micdem_OGSv1.0_pep.fa
- Coding Sequences (CDS): micdem_OGSv1.0_CDS.fa
- Transcript Sequences (includes non-coding sequence): micdem_OGSv1.0_trans.fa

2) Gff3 file: micdem_OGSv1.0.gff

3) Mapping file between Gene set NCBI Microplitis demolitor Annotation Release 101 and OGSv1.0: ID_map_report.txt