Selected induced genes and proteins.

Selected genes and proteins that are induced in H2O2 treated B. pumilus cells.Genes and proteins are listed, which could be assigned to putative regulons known from other Bacilli. Complete lists of upregulated as well as downregulated genes/proteins is given in supporting information Tables S2 and S3. For transcriptome, selected genes are shown for 3 and 8 minutes after stress compared to the control conditions (0 min). For a complete list of induced and repressed genes see Table S3. Differential regulation was determined from the biological triplicate measurements by false-discovery rate (FDR) from the Cyber-T p-values [27] by means of multiple testing correction [26]. Differential regulation was defined as a two-fold or higher differential expression with a FDR cut-off value of 0.05 or lower. Protein quantification was performed by the Delta 2D software (Decodon) from 3 biological replicates with a FDR cut-off value of 0.05 or lower.