Supplementary data

Supplementary data for a research artile "A highly contiguous genome assembly of red perilla (<em>Perilla frutescens</em>) domesticated in Japan". <strong>Supplementary Table S1.</strong> Source of protein-level functional annotation of Pfru_yukari_1.0. <strong>Supplementary</strong> <strong>Table S2.</strong> Statistics of the contigs generated by Hifiasm. <strong>Supplementary</strong> <strong>Table S3.</strong> AGP file (scaffolds_FINAL.agp) generated by SALSA2 describing the contig assignment of each scaffold. <strong>Supplementary</strong> <strong>Table S4.</strong> Length and the components of 20 pseudochromosomes. <strong>Supplementary</strong> <strong>Table S5.</strong> Summary of the gene annotation of each of the three methods. <strong>Supplementary</strong> <strong>Table S6.</strong> The GGSERACH results corresponds to the identified genes in Figure 3. <strong>Supplementary</strong> <strong>Figure S1.</strong> Merqury assembly spectrum plots of haplotype 1 (hap1) and haplotype 2 (hap2). <strong>Supplementary</strong> <strong>Figure S2.</strong> Dot-plot alignment between the draft scaffolds (indicated as “s”) (longest 25 scaffolds; scaffold_1–25) and reference PF40 genome assembly. Blue dots represent +/+ strand alignments and red dots represent +/- strand alignments. <strong>Supplementary</strong> <strong>Figure S3.</strong> Hi-C contact map of the draft scaffolds (indicated as “s”) generated by SALSA2.