Phyloseq objects associated with statistical analyses

Phyloseq objects associated with statistical analyses The phyloseq-class experiment-level objects (in the following called: phyloseq objects) were created from the provided data, using code available from the provided R scripts. To facilitate the reproducibility of the individual steps at different stages of the analysis, the provided phyloseq objects can be used as input as specified in the R scripts and do not have to be re-created from the raw data. However, the latter is also possible as all data and R code to create the phyloseq objects are provided.<br> <b>Reference</b> <b>Ingham AC, Kielsen K, Cilieborg MS, Lund O, Holmes S, Aarestrup FM, Müller KG, and Pamp SJ. (2019) </b>Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation. Microbiome 7:131 https://doi.org/10.1186/s40168-019-0745-z <br>