Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes

<br> Supplementary datasets accompanying paper: stage_peaks_anc_sel.xlsx : ATAC peaks with classification, conservation and binding sites<br> Pliv.mfuzz.enrichGO.txt : GO enrichment in MFuzz cluster<br> Pliv_genes_master_filt.xlsx : Gene models with corresponding information<br> bindetect_results_anf.txt : results of TOBIAS<br> hits_pprx_cl0_ord3vrr+Et_red.fa : alignment of homeobox sequences<br> Pliv_aH2p.gn.gtf.gz : annotation in GTF format<br> Pliv_PqN3S_sm.fa.gz : genome of P. livius <br> ansr_*_network.tsv.gz : Stage specific networks from ANANSE analysis<br> ATAC_pks_normcov.tsv : Coverage of unified peaks for ATAC-seq<br> Cttg_pks_normcov.tsv : Coverage of unified peaks for Cut-and-tag H3K27Ac data<br> lncRNA_stgSpe_fpkm.tsv : Expression levels (FPKM) for predicted lncRNAs for available RNA-seq samples <br> Split_Urchin_FPKMs.clean.txt.gz : Expression levels for unified ATAc-seq peaks following direct and reverse orientation