Data set 5 - GAPDH phylogenies

The following trees of the GAPDH family allow for a quick comparative analysis between the raw re-assembled transcriptomes on one side and the de-contaminated and consolidated transcriptomes on the other side. They show that the strategy described here resulted in much less redundant and much cleaner sequence data while preserving most of the taxonomic and phylogenetic signals. - GAPDH-MMETSP570-IQTREE-LG4X.pdf:GAPDH gene tree enriched with raw photosynthetic transcriptomes (n=570) computed with IQ-TREE (-m LG4X). - GAPDH-MMETSP172-IQTREE-LG4X.pdf:GAPDH gene tree enriched with the decontaminated and consolidated photosynthetic transcriptomes (n=172) computed with IQ-TREE (-m LG4X). - GAPDH-phylogenies-methods.pdf:Methodology description for the two GAPDH phylogenies. - set_1.txt List of 570 photosynthetic samples. - set_2.txt List of 172 photosynthetic consolidated transcriptomes.