Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Supplementary Material and FastTQC reports for 'Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations', as published in Microbial Genomics. Supplementary Material includes:- Description of the implementation of a real-time analysis protocol for Illumina sequencers- Definitions for validating the performance of various bioinformatics assays- Additional tables and figures containing results described in the manuscript. FastQC reports for datasets generated with the real-time sequencing protocol for run C. This dataset was uploaded to demonstrate the integrity of data generated using the real-time analysis protocol.