Additional file 5 of Monocyte-derived transcriptomes explain the ineffectiveness of abatacept in rheumatoid arthritis

Additional file 5: Table S1. Breakdown of replication sets. Table S2. Cellular characteristics of responders & non-responders after three months of treatment. Table S3. Results of an association analysis of gene expression between non-responders and responders (before treatment). Table S4. Results of an association analysis of gene expression between non-responders and responders (three months after treatment). Table S5. Results of gene set enrichment analysis between non-responders and responders. Table S6. Correlation between each gene's expression calculated from 44 specimens. Table S7. Association test of estimated expression in monocytes between responders and non-responders. Table S8. Results of an association analysis between mean expression of TLR5,MYD88 and IL17RA and 67 proteins. Table S9. Results of an association analysis of protein levels between responders and non-responders before treatment. Table S10. Results of meta-analysis of replication sets. Table S11. List of 166 genes that shows significant difference between responders and non-responders in the replication set as well as contribute to monocyte enrichment. Table S12. Results of gene set enrichment analysis of the 166 genes, shown in Supplementary Table S11.