Lathyrus sativus LS007 genome assembly and annotation Rbp1.0

Genome assembly of grass pea (<em>Lathyrus sativus</em> L.) genotype LS007, assembled from PromethION nanopore data and polished using Illumina HiSeq PE data. The assembly was annotated using the mikado-minos pipeline developed by the Earlham Institute. Also included is a separate annotation track for repeat sequences produced using the DANTE pipleline. For any questions regarding this dataset, contact [e-mail] Note: ctg14433 has been manually corrected based on sequenced amplicon data. Files have been updated accordingly. <strong>Assembly files:</strong> Lsativus_LS007_Rbp1.0.7z - compressed complete assembly without scaffolding. The annotation refers to this assembly Rbp_9 largest HiC scaffolds.7z - compressed fasta file of the largest 9 scaffolds following HiC scaffolding Lsat_LS007_Rbp_chloroplast.fasta - fasta file of the complete LS007 chloroplast genome Lsat_LS007_Rbp_mitochondrion.fasta - fasta file of the complete LS007 mitochondrial genome <strong>Annotation tracks:</strong> LATSA3860_EIv1.0.annotation.gff3 DANTE_transposable_element_protein_domains.gff3 Full_length_LTR_retrotransposons.gff3 Repeat_annotation_classI_classII_satellites.gff3 <strong>Annotation FASTA files:</strong> LATSA3860_EIv1.0.annotation.gff3.cds.fasta LATSA3860_EIv1.0.annotation.gff3.cdna.fasta LATSA3860_EIv1.0.annotation.gff3.pep.fasta <strong>Summaries and statistics:</strong> LATSA3860_EIv1.0.annotation.gff3.final_table.tsv LATSA3860_EIv1.0.annotation.gff3.mikado_stats.txt LATSA3860_EIv1.0.annotation.gff3.biotype_conf.summary LATSA3860_EIv1.0.annotation.gff3.final_table.tsv LATSA3860_EIv1.0.annotation.gff3.pep.fasta.functional_annotation.tsv NOT_UPDATED_LATSA3860_EIv1.0.annotation.gff3.metrics.tsv * Blobtools_passed_contigs.txt - list of all contigs of the assembly that pass the BlobTools filter (Streptophyta, 20-100x coverage, &gt;50 kbp) *this file has not been updated to reflect the correction to ctg14433