Additional file 2 of Coordinated single-nucleus responses for quantitative disease resistance involve a calcium-associated switch in transcriptional noise

Additional file 2: Table S1. General properties for level 1 single-nucleus RNA-seq clusters. Table S2. Evidence used for the annotation of single-nucleus RNA-seq clusters. Table S3. Annotation of consensus non-negative matrix factorization cell clusters. Table S4. Association of genes with CNMF groups. Table S5. Identification of cluster specific genes. Table S6. Annotation of single-nulceus RNA-seq clusters based on cell similarity annotations with other datasets. Table S7. Marker genes used for the annotation of single-nucleus RNA-seq clusters. Table S8. Gene ontology terms enriched in single nucleus RNA-seq clusters and average expression log fold change between control and inoculated cells. Table S9. Genes with differential expression between the control and treated samples. Table S10. Normalized read counts by gene by Trimmed Mean of M-values for tagseq data. Table S11. Differential expression analysis for inoculated versus control samples for the tagseq data. Table S12. List of cell-type specific and common DEGs with GO enrichment analysis. Table S13. Normalized expression along pseudotime trajectory 1 for differentially expressed genes along this trajectory. Table S14. Normalized expression along pseudotime trajectory 2 for differentially expressed genes along this trajectory. Table S15. Normalized expression along pseudotime trajectory 3 for differentially expressed genes along this trajectory. Table S16. Position along pseudotime trajectories and transcriptional noise metrics for each nucleus. Table S17. Number of expressing cells and transcriptional noise metrics for each gene. Table S18. Gene ontologies enriched among genes showing an increase in entropy upon inoculation. Table S19. List of Arabidopsis thaliana genes associated with defense responses. Table S20. Correlation tests between gene expression patterns and transcriptional noise metrics along pseudotime trajectory 2. Table S21. Gene ontologies enriched among genes with expression significantlycorrelated with entropy.