MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 1
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https://zenodo.org/record/6364215
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资源简介:
MD simulation of POPC (1-palmitoyl-2-oleoyl-phosphatidylcholine) bilayer with OPLS3e force field, 500 mM NaCl part 1 (0-500ns)
Dataset contains trajectories (_trj) for the first 500ns of the 1000ns trajectory, topology (-out.cms), input files (.cfg, .msj, .cms), and other files
For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_nacl500_x-xns.tar.gz)
Dataset also contains Gromacs converted files (.xtc, .gro and .top)
System: POPC bilayer in water
Number of lipids: 200 (100/leaflet)
Number of waters: 8880
Salt: NaCl
Concentration: 500 mM
Number of cations: 80
Simulation time: 1000 ns (in this dataset 0-500ns of original trajectories)
Simulation engine: Desmond 2019-4
Temperature: 300 K
Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 2
In contrast to previous version, this version contains gromacs format trajectory file .xtc with corrected time steps.
创建时间:
2024-01-19



