Weitemier et al. Hyb-Seq for phylogenomics in plants

Hyb-Seq data matrices used by Weitemier et al. for phylogenomic analyses of <em>Asclepias. </em> Weitemier_et_al_Asclepias_syriaca_single_copy_gene_exons.fasta contains the sequences of the targeted exons used for probe design. Weitemier_et_al_plastome.phy contains the whole plastome matrix. Weitemier_et_al_nuclear_concatenated.phy contains a concatenation of all 768 putatively single-copy gene matrices. Weitemier_et_al_nuclear_gene_matrices.tgz is a gzipped tarball of the 768 individual matrices for the putatively single-copy genes. Note that the exons of each gene are concatenated in no particular order. Weitemier_et_al_nuclear_concatenated.tre contains the best ML tree for the concatenation matrix with bootstrap support values. Weitemier_et_al_plastome.tre contains the best ML tree for the plastome matrix with bootstrap support values. Weitemier_et_al_nuclear_gene_trees.tgz contains the bootstrap trees from the ML analysis of each nuclear gene. Weitemier_et_al_MP-EST_species_tree.tre contains the MP-EST species tree with bootstrap values.