Additional file 1 of Host genetics and gut microbiota synergistically regulate feed utilization in egg-type chickens

Additional file 1: Table S1. Descriptive statistics for host phenotypes. Table S2. Summary statistics of whole-genome resequencing. Table S3. Summary statistics of 16S rRNA gene sequencing. Table S4. Detailed information on the SNPs associated with feed conversion ratio. Table S5. Detailed information on the SNPs associated with residual feed intake. Table S6. The SMR test based on the GWAS results for FCR. Table S7. The SMR test based on the GWAS results for RFI. Table S8. SRC analysis between the expression of each gene and FCR. Table S9. SRC analysis between the expression of each gene and RFI. Table S10. Differential expression genes detected between the top and bottom 20% FCR-ranked chickens. Table S11. Differential expression genes detected between the top and bottom 20% RFI-ranked chickens. Table S12. SRC analysis performed between the abundance of microbial taxa in each gut segment and FCR. Table S13. SRC analysis performed between the abundance of microbial taxa in each gut segment and RFI. Table S14. Wilcoxon rank-sum test on the relative abundance of each taxon between the top and bottom 20% FCR-ranked chickens. Table S15. Wilcoxon rank-sum test on the relative abundance of each taxon between the top and bottom 20% RFI-ranked chickens. Table S16. LEfSe analysis on the relative abundance of each taxon between the top and bottom 20% FCR/RFI-ranked chickens. Table S17. Heritabilityand cumulative abundance of heritable microbiota. Table S18. Detailed information on the significant SNPs associated with the abundance of key microbial genera. Table S19. The SMR test based on the mGWAS results for key microbial genera.