Supplementary data files for Manzano-Marín et. al. 2022 "Co-obligate symbioses have repeatedly evolved across aphids, but partner identity and nutritional contributions vary across lineages"

The data set consists of four parts: 1) "FISH_data":TIF-formatted files or unmerged and merged fluorescent channels of FISH microscopies of <em>Anoecia corni</em> and <em>Sipha maydis</em> embryos. 2) "genome_data": GenBank- and FASTA-formatted files of genome assemblies and annotations for <em>Buchnera</em> and co-obligate symbionts. 3) "pathway_data": Presence/absence tables of genes/pseudogenes coding for enzymes involved in the biosynthesis of essential amino acids and B vitamins in ODS spreadsheets and tab-separated value formats. Also, list of genes and pseudogenes of <em>Buchnera</em> genomes. 4) "phylogeny_data": FASTA-formatted nucleotide alignment files, NEXUS-formatted files used for Bayesian phylogenetic reconstruction, and resulting trees. For <em>Buchnera</em>, manually-curated orthologous groups of proteins are also included as flat text files. In addition, the files to infer gene losses by maximum parsimony in Count are included in the "Buchnera_count" folder.