Sequence variants and allele distribution of genes in six rat MHC haplotypes.

aAll genes except RT1-DMa and Tapbp are encoded within the Tcs2 locus.
bSize of the coding sequences (cds) in bp.
cTotal number of synonymous and nonsynonymous SNPs in the cds.
dTotal number of insertions/deletions on gene level.
eAllele distribution between MHC haplotypes; DA (RT1a), DA.1F (RT1f), DA.1I (RT1i), DA.1H (RT1h), DA.1U (RT1u). Sequence information for RT1n was obtained from NCBI GenBank.
fTotal number of amino acid substitutions.
gNumber of alternative isoforms at the protein level.
hBtnl2 was analyzed in only two strains.
ISequence information for RT1-DOb refers to the full-length transcript of this gene (see Fig. S1 for alternative transcript).