Data from: Phylogenomic insights into the evolution of stinging wasps and the origins of ants and bees

Raw sequence reads.Raw Illumina reads for all newly sequenced samples from this study.Alignment supermatrices.All alignment supermatrices from this study. In NEXUS format. Includes UCE locus character set information.all-alignment-supermatrices.zipBEAST XML data files.All BEAST XML data files generated for this study.all-beast-xml-files.zipPhylogenetic trees.All phylogenetic trees generated in this study.all-phylogenetic-trees-results.zipData tables.All data tables from this study.all-tables.xlsxPartitioning files.Partitioning files for the Hym-187T-F75 alignment supermatrix. Includes bylocus, hcluster, rcluster, and kmeans partitioning schemes. In RAxML format.partition-files-for-hym-187t-f75-supermatrix.zipAlternative topologies for SH-tests.All alternative topologies used to test the position of ants and bees. SH-tests were performed using RAxML.sh-test-alternative-topologies.zipSupplemental figures S1 and S2 combined.The supplemental figures combined into a single pdf figure.supplemental-figure-complete.pdfUCE contigs - aligned, untrimmed, and unfiltered.Trinity contigs containing UCE loci. The contigs have been extracted from the bulk set of Trinity contigs using Phyluce and aligned, but they have not been trimmed to remove ambiguously aligned sites or filtered to remove loci with missing data.uce-aligments-untrimmed-unfiltered.zipUCE loci from genome-enabled samples.UCE loci extracted from available genome-enabled Hymenoptera. Each UCE locus consists of a core region plus 400 bp of flanking DNA on either side. Includes a lastz match-counts database and fasta files for use with Phyluce.uce-loci-extracted-from-genome-enabled-samples.zipTrinity assemblies - bulk.The bulk set of Trinity assemblies for all enriched samples analyzed in this study. Includes assemblies from the previous Faircloth et al. (2015) study. Cleaned reads were assembled using Trinity ver. r2013-02-25.trinity-assemblies-all-samples.zipBaCoCa resultsBaCoCa analysis results. Performed on the Hym-187T-F75 locus set.bacoca-results.xlsx