Data supplement to "Domestication Reshaped the Genetic Basis of Inbreeding Depression in a Maize Landrace Compared to its Wild Relative, Teosinte"

Data files and scripts used for analysis of this paper.ReadMe.txt Overall description of files and folders in this data supplement, including explanation of data file columnsData files:49parents_KNNi_40255.hmp.txt Genoptype calls at 40255 SNPs, missing data imputed with KNNi. Hapmap file formatLandraces_FL1314_all_data_updated_4398taxa_Fest_2_ed.csv Trait data file for maize Tuxpeno populationLandraces_FL1314_all_data_updated_4398taxa_for_diallel.csv Trait data file for maize Tuxpeno population, formatted for diallel asreml scriptparentcalls_itr2_Combined_LR13_LR14_parents2_AGPv4_filter0219.hmp.txt.gz hplotype calls for maize parents and progenyparentcalls_ZeaGBSv27raw_RareAllelesC2TeoCurated_depth_AGPv4_filtered0210_rnd2.hmp.txt Haplotype calls for teosinte parents and progenyReadme (parentcalls_Info).txt Text file explaining the A,C,G, and T codes used in the haplotype call files. These are NOT base pair calls, they are codes for which parental haplotypes are inherited at each SNP.teo_genetic_map.csv Linkage map of teosinte populationteo_imp_02102017_traits-2 Trait data file for teosinte populationteosinte_pheno_cov_pc20190426_ed.txt xo_Combined_LR13_LR14_parents2_AGPv4_filter0219.txt Text file containing inferred position of crossovers within each maize progenyxo_ZeaGBSv27raw_RareAllelesC2TeoCurated_depth_AGPv4_filtered0210Text file containing inferred position of crossovers within each teosinte progenyteo_imp_02102017_traits-2.csv Trait data file for teosinte populationZipped folders containing data analysis scripts:Scripts_data_for_diallel.zipScripts_for_Inbreeding_Depression_Summary_and_Figures.zipScripts_for_rare_allele_scan_maize.zipScripts_for_rare_allele_scan_teo.zipScripts_for_regression_on_F.zipSupplemental_Figures.zipsee "List of Supplemental Figures.docx" contained in this zipped archive for description of files.Supplemental_Tables.zipsee "Maize Teosinte Inbreeding Depression List of Supplemental Tables.docx" contained in this zipped archive for description of files.