Parallel gene expression analysis with Ribo-Seq and RNA-Seq

Tavella_etal_Scer_transcriptome.gtf: Transcriptome of S.cerevisiae that includes the genomic coordinates of annotated features as well as de novo assembled transcripts mapped to genome S288C. Yeast was grown in normal and oxidative stress conditions, as described in the section "Biological Material". De novo transcript assembly was performed with Trinity, transcripts that did not overlap with annotated genes were kept and combined with the gene annotations.<br>Tavella_etal_tableofcounts.txt: Number of mapped reads per gene in Ribo-Seq (RF) and RNA-Seq (RNA) experiments, for control and oxidative stress (treated); Rep1: sequencing replicate 1; Rep2: sequencing replicate 2.<br>Tavella_etal_X_up.csv: list of genes significantly up-regulated by Ribo-Seq (X=RP) or RNA-Seq (X=RNA).<br>Tavella_etal_X_down.csv: list of genes significantly down-regulated by Ribo-Seq (X=RP) or RNA-Seq (X=RNA).<br><br>