Wordle representation of the most enriched TE families in lncRNAs.

Colors refer to different TE classes: purple = LTR, green = LINE, yellow = SINE, red = DNA. A. See also Figure S4. Human lncRNA set is from Gencode v13, mouse is from Esembl. The expected and observed counts of fragments corresponding to each TE are calculated using RepeatMasker output (see Methods). Observed values are obtained by considering overlapping TEs lncRNA exons. Expected values are calculated based on the overall density of each TE family in the genome according to the RepeatMasker output assuming a random distribution of TE family members throughout the genome.). Only families statistically enriched in term of counts (fragment numbers) are kept (at least p-value