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Annotree - GTDB archaea R95 database

Name: Annotree - GTDB archaea R95 database
Creator: Doxey
Published: 2020-08-25T00:00:00+08:00

Zenodo2020-08-25 更新2026-04-07 收录

微生物系统发育

功能注释

数据链接：

https://zenodo.org/record/4001160 数据链接链接失效反馈

官方服务：

资源简介：

GTDB archaea R95 database from AnnoTree contains all necessary information for visualizing the archaeal tree (tree structure, kegg hits, pfam hits, tigrfam hits)

应用场景：

提供机构：

Doxey

创建时间：

2020-08-25

基因表达

功能注释

Table S17. Significant GO terms associated with the real hub genes. Results based on human GO-database. (XLSX 18 kb)

DataCite Commons2020-08-26 更新60

Supporting Dataset S2

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16SrDNA序列分析

Supporting Dataset S2. Files used to infer the 16S rDNA phylogeny aimed at inferring the phylogenetic position of Clade X (shown in Supporting Figure S1). Contains alignment before and after masking,

Figshare2025-03-23 更新50

Additional file 12: of Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns

基因剪接

功能注释

Table S4. Functional annotation. Contains the functional annotations enriched for by the UpSignature and DownSignature of mouse tissues. (XLSX 15 kb)

DataCite Commons2020-08-26 更新30

Summary of the classification of genes previously assigned to categories “Unknown function” and “Unclassified” of the JCVI-CMR ontology.

基因分类器

功能注释

From the total number of “Unknown function” and “Unclassified” genes, nearly 50% have a name, with is crucial for text corpora retrieval. From those, ∼70% have enough literature (min = five abstracts;

NIAID Data Ecosystem50

Strains used in the phylogenetic analysis with their culture accession and GenBank numbers.

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菌株鉴定

Strains from this study are in bold and ex-types are marked with*. NA: not available.

NIAID Data Ecosystem30