遇见数据集

Bisulfite Genome for hg19 with phage lambda genome

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Zenodo2021-04-03 更新2026-05-25 收录
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The data provided here is an indexed version of the human genome hg19. The hg19 fasta file was originally downloaded from UCSC (http://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz) and combined with a target portion of the phage lambda genome from 4500 to 6500 base pairs, originally downloaded from NCBI (https://www.ncbi.nlm.nih.gov/nuccore/NC_001416.1.fa.gz)The Bismark program to map bisulfite treated sequencing reads was used to generate the index using the bismark_genome_preparation command. The indexed files then compressed using tar and then pigz to make a small and. Ordered set of the Bisulfite Genome files.References:<br> Felix Krueger, Simon R. Andrews, Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications, <em>Bioinformatics</em>, Volume 27, Issue 11, 1 June 2011, Pages 1571–1572, https://doi.org/10.1093/bioinformatics/btr167

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Zenodo
创建时间:
2021-04-03
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