Tropinone reductase
收藏NIAID Data Ecosystem2026-03-12 收录
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https://figshare.com/articles/dataset/TPRI/14343272
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资源简介：
We downloaded all orthologous sequences of TAa and TPSs of D.
stramonium, D. metel and 11 species of Solanaceae to construct the orthogrpups. Downloades sequenceso of proteins and ORF were
extracted using TransDecoder and corroborated with GenScan. TPS genes were
translated with GenScan, are in
the right direction and are the correct CDS; we corroborated this with
the NCBI. The database used for BLAST was Uniprot; all available data for the
analyzed plant species were downloaded. These amounts 847,544 3. BLAST was carried out with a filtering evalue
of 1e-3, and only hits above 85 % were selected.
Orthogroups was inferred using Orthofinser v 2.3.3. DIAMONS (Emms and Kelly
2015, 2019) while OrthoMCL was used to assess orthologs among species (Chen et
al., 2006).
创建时间：
2021-05-12
