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Phables v 0.2.0 benchmarking data and results

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Zenodo2023-04-04 更新2026-05-26 收录
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This record contains all the benchmarking datasets and results for the Phables manuscript. The datasets used are, Water samples from Nansi Lake and Dongping Lake in n Shandong Province, China (NCBI BioProject number PRJNA756429), referred to as <strong>Lake Water</strong> Soil samples from flooded paddy fields from Hunan Province, China (NCBI BioProject number PRJNA866269), referred to as <strong>Paddy Soil</strong> Wastewater virome (NCBI BioProject number PRJNA434744), referred to as <strong>Wastewater</strong> Stool samples from patients with IBD and their healthy household controls (NCBI BioProject number PRJEB7772), referred to as <strong>IBD</strong> Each dataset was preprocessed using Hecatomb. The Lake Water dataset was also assembled using MEGAHIT (referred to as <strong>Lake Water - MEGAHIT</strong>) and metaSPAdes (referred to as <strong>Lake Water - metaSPAdes</strong>). All the datasets were run using PHAMB and Phables and the genomes were evaluated using CheckV.

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2023-04-04
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