Supplementary Material for "Comprehensive Analysis of Disease Pathology in Im-munocompetent and Immunocompromised hosts fol-lowing pulmonary SARS-CoV-2 Infection"

Supplementary Materials: The following figure/tables are uploaded here:

Figure S1: Histopathology of the trachea in SARS-CoV-2 infected hamsters.

Figure S2: qPCR analysis of B and T cell lineage markers in LD and CP-LD infected hamster lungs

Figure S3: Histopathology of the adrenal gland in SARS-CoV-2 infected hamsters

Figure S4: White pulp content in the spleen of SARS-CoV-2 infected hamsters.

Figure S5: Acute renal tubular necrosis in SARS-CoV-2 infected hamsters.

Figure S6: Top canonical pathways operative in immunocompetent hamster lungs infected with low-dose SARS-CoV-2 at 4 days post-infection

Figure S7: Top canonical pathways operative in immunocompetent hamster lungs infected with low-dose SARS-CoV-2 at 16 days post-infection

Figure S8: Canonical hypercytokinemia/hyperchemokinemia pathway map

Figure S9: Canonical interferon signaling pathway map

Figure S10: Top canonical pathways operative in immunocompromised hamster lungs infected with low-dose SARS-CoV-2 at 4 days post-infection

Figure S11: Top canonical pathways operative in immunocompromised hamster lungs infected with low-dose SARS-CoV-2 at 16 days post-infection

Table S1: Differentially regulated biological functions at 4dpi versus uninfected hamster lungs

Table S2: Differentially regulated biological functions at 16dpi versus uninfected hamster lungs

Table S3: Differentially regulated biological functions in immunosuppressed SARS-CoV-2 infected hamster lungs at 4dpi

Table S4: Differentially regulated biological functions in immunosuppressed SARS-CoV-2 infected hamster lungs at 16dpi

Table S5: List of primers used for hamster and SARS-CoV-2 genes in the present study