Additional file 2 of Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

Additional file 2: Table S1A. Sample information for the WGBS; Table S1B. Sample information for the RNA sequencing; Table S1C. Sample information for the whole genome sequencing; Table S2. Comparison of methylation statistics between two different cattle reference assemblies. Table S3. DMC and DMR number for each comparison pairs. Please note that the numbers, which may be affected by different common data amount for each tissue. Table S4. PMD information for different samples. Table S5. Placenta PMD percentages and genes located in the shared and lineage-specific placenta PMDs between cattle and human. Table S6. GO analyses for genes shared or specific in PMDs between human placenta and cattle placenta. Table S7. Gene ontology analysis for genes overlapping with cattle placenta HMD. Table S8. GO analysis for the genes overlapped with cattle placenta PMDs. Table S9. Information of 16 non-blood DNA methylation level drops. Table S10. Differentially methylated TSS-HMR between human and cattle. Table S11. Gene ontology analysis for genes totally located in the HMR. Table S12. common twin genes in one HMR core region between cattle and human. Table S13. Gene ontology analyses for genes specifically high expressed in different tissues. Table S14. Information for experimentally supported CpG Islands.