Images & code for drone image analysis for manuscript on pennycress diversity

Images & code for drone image analysis for manuscript on pennycress diversity Population and adaptation history of 739 Thlaspi arvense natural accessions The following repository contains: Python_DroneImageProcessing_v1.ipynb - Juypter notebook used for orthomosaic scaling, rotating, cropping, plot grid assignment, image colour space thresholding and quantification. field_map.png - Reference images for each orthomosaic with plot labels to assist with plot orientation in the field ZIP folders by field study containing: [orthomosaics].jpg - Orthomosaic with filenames by flight date plot_grid_info.csv - Table containing accession names by plot location grid_metadata.csv - Metadata CSV containing infromation for parameters chosen for plot grid assignment output_metadata.csv - Metadata CSV containing infromation for parameters chosen for image thresholding output.csv - Output CSV containing quantifed green cover by plot