Additional file 1 of A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens

Additional file 1: Table S1. List of all significant SNPs sorted by significance1. SNP = name of the single nucleotide polymorphism; GGA = Gallus gallus chromosome; location (bp) = position of the SNP on the chromosome in base pairs on the Galgal4 assembly; MAF = minor allele frequency; EFF = allele substitution effect; SE = standard error of the effect; P-value = P-values from the single SNP regression while simultaneously correcting for the background polygenic effect; P-valueFDR = false discovery rate P-value; LOG = the −log10 of the P-value; VSNP = variance due to the SNP (calculated as 2pqb2, where p is the frequency of major allele, q = 1 − p is the frequency of the minor allele and b is the allele substitution effect); VA = additive genetic variance; VP = phenotypic variance; VAsnp (%) = percentage of additive genetic variance explained by each SNP; VPsnp (%) = percentage of phenotypic variance explained by each SNP. 1Of the 96 significant SNPs 18 are proprietary to Aviagen and therefore their base pair location has been excluded.