Additional file 10 of Recombination and transposition drive genomic structural variation potentially impacting life history traits in a host-generalist fungal plant pathogen
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Additional file 10: Supplementary Table 5. Sheets 1-6 are Cytosine methylation data from alignment of bisulfite sequencing reads to the 1980 genome. The first column is the NCBI chromosome accession. The columns for these tables are described in the CLC genomic workbench manual here: https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Call_Methylation_Levels.html . Each spreadsheet represents one of the samples, for example, 0 HPI R1 is 0 hours post-inoculation replicate 1. Sheet 7 (labelled'hotspot t-tests') is the results of t-tests to assess the difference between windows containing, or not containing, recombination hotspots, for gene density, number of structural variants, repeat density and SVπ.
提供机构:
Esquivel-Garcia, Laura; Graham-Taylor, Carolyn; Khentry, Yuphin; Newman, Toby E.; Coutu, Cathy; Bennett, Sarita Jane; Lindbeck, Kurt; Michael, Pippa J.; Chander, Subhash; Vicini, Simone; Kamphuis, Lars G.; Derbyshire, Mark C.; Hegedus, Dwayne; Camplone, Claudia; Clarkson, John; Rijal Lamichhane, Ashmita
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2025-04-28



