Data from: Population genomics of divergence within an obligate pollination mutualism: selection maintains differences between Joshua tree species

CompleteSNPdataComplete SNP data from Joshua trees (Yucca brevifolia and Y. jaegeriana), generated by RADseq. Data is in STRUCTURE format. This data set includes SNPs and individuals with large amounts of missing data, excluded from downstream analyses. Text file saved as comma-separated values.AllGentoypes347Trees.csvTrimmedSNPDataRAD-seq data from Joshua trees (Yucca brevifolia and Y. jaegeriana). Data is in STRUCTURE format. This data set has been trimmed to remove SNPs more than 20% missing data and individuals with 30% or more missing data. This dataset was used for all analyses described in Royer et al. Text file saved as comma-separated values.GoodLoci319Trees.csvArlequinInputTrimmed SNP data from Joshua trees (Yucca brevifolia and Y. jaegeriana) formatted for analysis in Arlequin. Text file saved as tab-separated values.StructureInputRandomly selected SNPs from Joshua trees (Yucca brevifolia and Y. jaegeriana) used to classify individuals in STRUCTURE. Text file saved as tab-separated values.batch_1.structure.tsvTasselAllGenotypesSNP data from Joshua trees (Yucca brevifolia and Y. jaegeriana) in TASSEL format used for Genome-Wide Association Study. Text file saved as tab-separated values.PhenotypesPhenotypic data from Joshua trees (Yucca brevifolia and Y. jaegeriana), formatted for analysis in TASSEL. Individual names are in the first column. Trait names (header row) include units in parenthesis. Text file saved as tab-separated values.TasselAllMeasurementsJan8.txtBayesianGenomicClinesBrevifoliaDataAllele counts data from Joshua trees (Yucca brevifolia) for analysis using Bayesian Genomic Clines. Parental population file 1. Saved as plain text.BGC_Brev9430LociBayesianGenomicClinesJaegerianaDataAllele counts data from Joshua trees (Yucca jaegeriana) for analysis using Bayesian Genomic Clines. Parental population file 2. Saved as plain text.BGC_Jaeg9430LociBayesianGenomicClinesHybridZoneDataGenotype data from Joshua trees (Yucca brevifolia and Y. jaegeriana) for analysis using Bayesian Genomic Clines. Hybrid population data. Saved as plain text.BGC_Tika9430LociTreeGPSCoordinatesGPS coordinates for sampled trees in decimal minutes. Text file saved as comma-separated values.TreeCoordinates.csv