Additional file 1 of Comparative analysis of lipid and flavonoid biosynthesis between Pongamia and soybean seeds: genomic, transcriptional, and metabolic perspectives

Additional file 1: Table S1. The origin of additional genes from 999 OGs that were more copy number in Pongamia than that in soybean. Table S2. KEGG classification of 999 OGs that were more copy number in Pongamia than that in soybean. Table S3. Mapping ratio of RNA from various tissues of Pongamia. Table S4. Gene expression profiles in various tissues of Pongamia. Table S5. Identification of three gene families encoding lipid-body-membrane proteins (oleosin, caleosin, and steroleosin) in P. pinnata, G. max, and A. thaliana. Table S6. Statistics of members from three gene families encoding lipid-body-membrane proteins (oleosin, caleosin, and steroleosin) in P. pinnata and G. max. Table S7. Differentially accumulated metabolites in Pongamia seeds compared to soybean seeds using untargeted metabolomics analysis. Table S8. KEGG pathway mapping of differentially accumulated metabolites identified through untargeted metabolomics analysis. Table S9. Targeted determination and absolute quantification of flavonoids in seeds of Pongamia and soybean. Table S10. Gene expression of HI4'OMTs in different tissues of Pongamia. Table S11. Targeted determination and quantification of FFAs in seeds of Pongamia and soybean. Table S12. Lipidomic analysis of Pongamia and soybean seeds. Table S13. Identification of genes related to fatty acid and lipid biosynthesis in the genomes of P. pinnata and G. max. Table S14. Statistics of genes related to fatty acid and lipid biosynthesis in P. pinnata, G. max, and A. thaliana. Table S15. Expression profiles of OGs involved in fatty acid and lipid biosynthesis in P. pinnata and G. max.