ESM2_AMP

The feature files for all proteins in the dataset required for the protein-protein interaction prediction framework (i.e., ESM2 embeddings) and the weight files for the three main models.Pan_dataset_protein_features.npy contains the ESM2 embedding features of all proteins in the Pan_dataset; Bernett_dataset_protein_features.zip is a collection of ESM2 embedding features for all proteins in the Bernett dataset;<br>Multi_species_dataset_protein_features.zip is a collection of ESM2 embedding features for all proteins in the Multi_species_dataset;<br>real_test dataset.zip contains the features of all samples in the real_test dataset;<br>ESM2_AMPS.pth is the weight file for the ESM2_AMPS model (Trainning on Pan_dataset);<br>ESM2_AMP_CSE.pth is the weight file for the ESM2_AMP_CSE model;<br>ESM2_DPM.pth is the weight file for the ESM2_DPM model;ESM2_AMPS_B.pth is the weight file for the ESM2_AMPS model (Trainning on Bernett dataset);ESM2_GRU_B.pth is the weight file for the ESM2_GRU model (Trainning on Bernett dataset);7.ESM2_AMPS and ESM2_AMP_CSE attention_weights.zip are the extracted attention weights when the input dataset is real_test dataset for the ESM2_AMPS and ESM2_AMP_CSE models.<br>