Adsorption free energies and potentials of mean-force for interactions between amino acids, lipid fragments, and nanoparticles

This dataset contains tabulated potentials of mean force (PMFs) and associated adsorption (binding) free energies for interactions of amino acids side chain analogues and lipid fragments (LF) with a range of materials: titanium dioxide, iron oxide, amorphous silica, quartz, and a range of carbon-based materials including amorphous carbon, graphene and carbon nanotubes both in a pristine form and functionalized by a number of chemical groups. All data were computed from atomistic molecular dynamics simulations as a part of the SmartNanoTox project. The data are intended to be used in coarse-grained models describing interactions of nanomaterials with nanoparticles and for the prediction of the binding affinity of proteins and lipids to nanoparticles.