Matrices and control files

Here we provide all the necessary files to run the analyses described in the paper. Files are organized by folders. dating_analysis -> control files necessary to run the dating analysis. ddrad_data -> Intermediate files from pyrad's steps 3 and 5, and matrices derived from the ddRAD method used for the phylogenetic and introgression analyses. genome_skimming_matrices -> matrices derived from genome skimming method used in the phylogenetic analyses. JML_analysis -> all the files used to run and visualize the JML analysis.