Metrics of genome architecture and their values used for phylogeny-aware association mapping across the 1,239 genome assemblies.

Metrics include values of non-coding and repeat enrichment of the 8 top-enriched k-mers. The genome-wide repeat proportion (repeat_prop). The number of >1 kb-length sequences sharing >95% identity (n_1kb), N50 (sequence length of the shortest contig at 50% of the total assembly length), average scaffold length in base-pairs (avgLen), the total number of proteins (proteins), the total number of scaffolds (seqCounts), number of GC segments genome-wide (segmentation), the genome-wide GC content (GC), the PCA reduction of CAZyme content (trophism_PC1 and trophism_PC2) and genome size in base-pairs (totalBases). (XLSX)