Additional file 2 of Interaction between phenylpropane metabolism and oil accumulation in the developing seed of Brassica napus revealed by high temporal-resolution transcriptomes

Additional file 2: Table S1. Summary of RNA sequencing. Table S2. Correlation between biological replicates and different time points. Table S3. Summary of seed-specific genes. Table S4. Summary of marker genes in each core module. Table S5. Summary of genes in each co-expression network module. Table S6. Summary of acyl-lipid genes in each core module. Table S7. Summary of phenylalanine genes in each core module. Table S8. Summary of MapMan enrichment results of floralwhite (stage I) module. Table S9. Summary of MapMan enrichment results of brown2 (stage II) module. Table S10. Summary of MapMan enrichment results of palevioletred2 (stage III) module. Table S11. Summary of MapMan enrichment results of darkorange2 (stage IV) module. Table S12. Summary of MapMan enrichment results of midnightblue (stage V) module. Table S13. Summary of hub genes in each co-expression network module. Table S14. Summary of genes integrated from co-expression network and TWAS-significant genes. Table S15. Summary of acyl-lipid genes in TT5, BAN and TT19 co-expression network. Table S16. Summary of acyl-lipid genes in TT5, BAN, TT19 and TT1 co-expression network. Table S17. Summary of candidate genes that expression significant correlation with seed oil content and seed coat content in co-expression network of FAs biosynthesis genes. Table S18. Summary of candidate genes that expression significant correlation with oil content and seed coat content in co-expression network of acyl-related genes. Table S19. Seed-specific transcription factors overlapped with TWAS-significant genes or co-expression network hub genes. Table S20. Seed-specific transcription factors that significantly correlated with SOC. Table S21. Summary of genes in EIL5, ERF12 and GATA19 co-expression network. Table S22. Summary of acyl-lipid genes in EIL5, ERF12 and GATA19 co-expression network. Table S23. The binding site information in the promoter of genes that are coregulated by EIL5, ERF12 and GATA19. Table S24. Summary of acyl-lipid genes in ZS11. Table S25. Summary of phenylalanine genes in ZS11. Table S26. Primers used for qRT-PCR.