Positive selection, genetic recombination, and intra-host evolution in novel equine coronavirus genomes and other members of the Embecovirus subgenus

There are 4 RNAseq datasets extracted from horse samples presenting clinical equine coronavirus symptoms. The goal of this study was to identify any evidence for the presence of intra-host evolution (quasispecies development) and to identify signals of natural selection acting within the protein coding regions from the assembled genomes. There are 4 RNAseq datasets and 4 assembled genomes.