Best hit and class-depth statistics obtained with different methods on the set of classified Transfac PFMs.

Values were summarized for different subsets of motif classes. Top 5: the five largest classes; Min 20: classes with at least 20 members; Min 10: classes with at least 10 members. For the class depth averages of upper (Uqr) and lower quartiles (Lqr) as well as medians (Med) are given. Highest values in each column are highlighted in bold. The Average summarizes the six leftmost columns.