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TIGER SHAP values and Shapley interactions

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Figshare2024-10-16 更新2026-04-08 收录
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https://figshare.com/articles/dataset/TIGER_SHAP_values_and_Shapley_interactions/27245061/1
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This dataset contains all SHAP values and Shapley interactions found by SHAP zero, KernelSHAP, and SHAP-IQ from TIGER, using code from https://github.com/amirgroup-codes/shapzero/.<b>Description of files</b><b>TIGER_shapzero_values.csv:</b> All SHAP values found by SHAP zero. <br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Position 1 to 26</i>: SHAP value of each nucleotide at each position. <br><b>TIGER_kernelshap_values.csv:</b> All SHAP values found by KernelSHAP. <br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Position 1 to 26</i>: SHAP value of each nucleotide at each position. <br><b>TIGER_shapzero_fsi.csv:</b> All Faith-Shap interactions found by SHAP zero. <br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Order 1 to 3</i>: Dictionary of all interactions of orders 1-5. The keys represent the nucleotide position (0-indexed) affected, and the values represent the Faith-Shap interaction at those nucleotides. For example, the key:value pairing {(0,1,2):0.1} and the sequence TCA, means that the first (T), second (C), and third (A) nucleotides are interacting with a Faith-Shap interaction value of 0.1. <br><br><b>TIGER_shapiq_fsi.csv:</b> All Faith-Shap interactions found by SHAP-IQ. <br><br>Columns:<br><i>Sequence</i>: sequence inputted to TIGER.<br><i>Order 1 to 2</i>: Dictionary of all interactions of orders 1-2. The keys represent the nucleotide position (0-indexed) affected, and the values represent the Faith-Shap interaction at those nucleotides. <br>Order 3 part 1 to 6: Since SHAP-IQ produced too many 3rd-order interactions for Excel to handle in a single column, the 3rd orders are split across 6 columns. <br>
提供机构:
Tsui, Darin
创建时间:
2024-10-16
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