Data from: Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis

Mammalian sex is determined by opposing networks of ovarian and testicular genes that are well characterized. However, its epigenetic regulation is still largely unknown, thus limiting our understanding of a fundamental process for species propagation. Here we explore the 3D chromatin landscape of sex determination in vivo, using METALoci, a novel genome spatial auto-correlation analysis. Extended Data File 1: Coordinates for HH metaloci in each sample. The EDFile1_H3K27ac_HH_metaloci_per_gene.zip file contains four files named: XX10.5_H3K27ac_HH_metaloci_per_gene.bed XX13.5_H3K27ac_HH_metaloci_per_gene.bed XY10.5_H3K27ac_HH_metaloci_per_gene.bed XY13.5_H3K27ac_HH_metaloci_per_gene.bed Each BED file contains the following columns tab separated: chr Chromosome start Start coordinates end End coordinates MetaLociBinNumber Number of the bin in the METALoci layout GeneSymbol Gene symbol Extended Data File 2: Coordinates bins in METALoci with ATAC-seq accessible peak targeted by TF. The EDFile2_TF_ATAC_ML_Sites.zip file contains four files named: XX10.5_TF_ATAC_ML_Sites.tsv XX13.5_TF_ATAC_ML_Sites.tsv XY10.5_TF_ATAC_ML_Sites.tsv XY13.5_TF_ATAC_ML_Sites.tsv Each TSV file contains the following columns tab separated: chr Motif site chromosome start Motif site start coordinates end Motif site end coordinates bin Hi-C bin number pchr ATAC site chromosome pstart ATAC site start coordinates pend ATAC site end coordinates gene Gene symbol