Benchmarks of the 5-step pipeline on NA12878 whole genome (JP protocol).
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https://figshare.com/articles/dataset/_Benchmarks_of_the_5_step_pipeline_on_NA12878_whole_genome_JP_protocol_/1486207
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Again, combined execution in elPrep is faster than executing the steps one by one. elPrep executes the five-step pipeline faster than the three-step pipeline (Table 5), even though it has two more steps. This is because the second step here removes unmapped and erroneously tagged reads. This reduces the number of reads that are processed by the subsequent steps. This can be seen by looking at the timings of the individual steps, both for elPrep and Picard, as well. Overall, elPrep executes the five-step pipeline almost five times faster.
Benchmarks of the 5-step pipeline on NA12878 whole genome (JP protocol).
创建时间：
2015-07-16
