Doctoral thesis-Mengqi Wang-Chapter 5

<strong>Table S1</strong> Genes and their primer sequences used for real-time qPCR validation of RNA-sequencing results <strong>Table S2</strong> Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows <strong>Table S3</strong> The list of differentially methylated cytosines (DMCs) in the context of CpG, CHG and CHH <strong>Table S4</strong> The number of DMCs (CpG, CHG and CHH) in different genetic regions <strong>Table S5 </strong>The list of DMRs and annotation <strong>Table S6</strong> The list of genes harboring DMCs or overlapping with DMRs <strong>Table S7</strong> Functional enrichment of genes harboring at least 15 DMCs <strong>Table S8</strong> The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs <strong>Table S9</strong> The list of differentially expressed (DE) genes and their functional enrichment <strong>Table S10 </strong>The genome-wide correlation between DNA methylation and gene expression and list of MetGDE genes <strong>Table S11</strong> The results of functional enrichment differentially methylated and expressed genes (MetGDE genes) <strong>Table S12</strong> The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes) <strong>Table S13 </strong>The correlation between discriminant candidate biomarkers