Additional file 10 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 10: Table S1. (Fibroblast, Proximal Tubular)+ cells as found by niche-DE in the integrated 10X Visium fibrotic kidney data. Table S2. Ligand-receptor pairs between fibroblasts and proximal tubular cells found by niche-LR in the integrated 10X Visium fibrotic kidney data. Table S3. The list of enriched pathways found by enrichR using the gene list in table S1. Table S4. (Proximal Tubular, Fibroblast)+ cells as found by niche-DE in the integrated 10X Visium fibrotic kidney data.