five

(TM3_ASPH-CIS) POPC_512_TM3_ASPH_10_5up_5down_NaCl_150mM_310K

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https://zenodo.org/record/1205519
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System description ------------------- - Title: (TM3_ASPH-CIS) Simulation POPC_512_TM3_ASPH_10_5up_5down_NaCl_150mM_310K membrane - Description: Simulation of a POPC membrane containing ten LAPTM4B-TM3_ASPH peptides using charmm36 at 310K. (TM3 peptides have cis peptides bonds by mistake) - MD engine: gromacs 5.0.4 - Force field: charmm36 - Temperature: 310K - Simulation time: 2000ns - Saving frequency: 100ps - Molecular content: TM3_ASPH          10 POPC             512 SOL            20480 NA                55 CL                55 - Other information:   * Membrane containing LAPTM4B TM3 peptides.   * ASP 202 is in protonated form   * 5 peptides pointing up/ 5 peptides pointing down - Problems   * By mistake some peptides bonds in TM3 are in CIS configuration
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2020-01-21
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