Nuclear sequences are partitioned into protein codon positions and mitochondrial sequences are partitioned into protein codon positions and RNA stems and loops. Comparisons (A) – (D) employ Mt16 and N
Tree topologies are ordered by decreasing likelihoods (shown as Rank).−Ln, negative log-likelihood of tree. ΔlnL, difference in likelihood score between this tree and tree rank 1. AU, the p-value of t
CT test performance on trees generated under BD, BDEI, BDSS models and their -CT versions (100 trees per model, each having 500-1000 tips). We report the number of trees for which the CT-test p-value
