Harvest and phylogenetic network analysis of SARS virus genomes (CoV-1 and CoV-2)

Data and analyses relating to:<br>Grimm GW, Morrion D (2020). Trees and viruses: the SARS group. <i>Genealogical World of Phylogenetic Networks, </i>posted 30/3/2020<i>.</i>http://phylonetworks.blogspot.com/2020/03/trees-and-viruses-sars-group.html<i><br></i><i><br></i>The 7z-archive [7z.org/Wikipedia] includes all used data (non-curated gene bank harvest, curated alignment) and analysis files in standard phylogenetic data formats (FASTA, NEXUS, NEWICK, Splits-NEXUS). For labelling conventions and archive content see ReadMe.txt.<br><b>Figures</b><i>MLTreeStrictGrCons.png—</i>Maximum likelihood tree based on strict group consensus sequences and branch support established via non-parametric bootstrapping<i>NNetCPlusRecomb.png—</i>Uncorrected <i>p-</i>distance (Hamming) based planar phylogenetic network based on the (strict) group consensus<br>data. Coloured lines refer to shared sequence patterns as visible from the alignment (likely recombination events)<i>NNetPlusSupport.png—</i>Uncorrected <i>p</i>-distance (Hamming) based planar phylogenetic networks based on the non-consensed (original) data (in total, 291 near-complete virus genomes) used to define major groups for consensing approach. Bottom-right, bootstrap consensus network for the same data.<br><br>Comments are welcomed; please use the comment option at our blog Genealogical World of Phylogenetic Networks.<br>