Data from: Plant DNA metabarcoding of lake sediments: how does it represent the contemporary vegetation
收藏Mendeley Data2024-06-25 更新2024-06-27 收录
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https://datadryad.org/stash/dataset/doi:10.5061/dryad.g72v731
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资源简介:
NGSfilter file.The ngsfilter file containing the sample - PCR tag information necessary for demultiplexing the sequence data in OBITools.140704_SND104_B_L001_GZO-13.ngsfilterPost OBITools analysis scriptThe R script contains the various commands that were used for filtering the metabarcoding data and matching it to the vegetation.FilterDNAandCompareToVegetation.RVegetation dataThe results of the vegetation surveys of the 11 lakes. Abundance assignment in the >2m survey is follows: Dominant taxa are recorded as 4, common taxa as 3, scattered taxa as 2 and rare taxa as 1.Vegetation.csvMetabarcoding resultsThe OBITools output, expanded with the lake name, core number, depth information and and a shorter taxa code used for linking the results to the vegetation data.IdentifiedDNA.tsvSample code informationFile that links the sample codes used in the study to the lake name, core and depth information.SampleToSampleInfo.tsvForward reads (part 1)Compressed FASTQ file containing the first half of the forward reads.140704_SND104_B_L001_GZO-13_R1-1.fastq.gzForward reads (part 2)Compressed FASTQ file containing the second half of the forward reads.140704_SND104_B_L001_GZO-13_R1-2.fastq.gzReverse reads (part 1)Compressed FASTQ file containing the first half of the reverse reads.140704_SND104_B_L001_GZO-13_R2-1.fastq.gzReverse reads (part 2)Compressed FASTQ file containing the second half of the reverse reads.140704_SND104_B_L001_GZO-13_R2-2.fastq.gz
创建时间:
2023-06-28



