Echinococcus multilocularis genetic analysis

"BEAUti_setting" and "data_whole.xml" were a BEAUTi file and a generated file for BEAST v1.10.4. "data_whole.fasta" and "dataset_locations.txt" files were used for BEAUTi settings. Stop codons of each protein-coding sequence (in data_whole.fasta) were deleted for the model selection by Kakusan4. "data_MtG_network.nex" and "data_Mt3CDSs_network.nex" are original files for the haplotype network analysis by PopART v1.7.