Additional file 3 of Differential responses in placenta and fetal thymus at 12 days post infection elucidate mechanisms of viral level and fetal compromise following PRRSV2 infection

Additional file 3 : Table S1. Gene names. A total of 286 test genes and 10 housekeeping genes were assayed for mRNA expression levels on the NanoString platform. Table S2. Differential expression analysis results for all genes and all contrasts. The results are organized by gene then by contrast group within tissue. The included columns are log2FC: the log2 fold change value in the test group compared to the contrast group, AveExpr: the average count expression value for the gene across all samples, t: the T statistic for a given gene and contrast, P Value: the calculated P value for a given gene and contrast, adj.P.Val: the P value adjusted for multiple testing using the Benjamini Yekutieli correction method, and B: The B statistic for the log odds that the gene is differentially expressed. Table S3. Principle component loading gene values for placenta and thymus. Table S4. The Activation Z scores for all recognized pathways in the IPA software. The results are organized by IPA pathway, then by contrast group within tissue. The core analysis was done on individual contrast groups using DEG as input. Table S5. Placenta normalized counts by gene. Table S6. Fetal thymus normalized counts by gene.